Package: MultiBD 1.0.2

MultiBD: Multivariate Birth-Death Processes

Computationally efficient functions to provide direct likelihood-based inference for partially-observed multivariate birth-death processes. Such processes range from a simple Yule model to the complex susceptible-infectious-removed model in disease dynamics. Efficient likelihood evaluation facilitates maximum likelihood estimation and Bayesian inference.

Authors:Lam S.T. Ho [aut], Marc A. Suchard [aut, cre], Forrest W. Crawford [aut], Jason Xu [ctb], Vladimir N. Minin [ctb]

MultiBD_1.0.2.tar.gz
MultiBD_1.0.2.zip(r-4.7-x86_64)MultiBD_1.0.2.zip(r-4.6-x86_64)MultiBD_1.0.2.zip(r-4.5-x86_64)
MultiBD_1.0.2.tgz(r-4.6-x86_64)MultiBD_1.0.2.tgz(r-4.6-arm64)MultiBD_1.0.2.tgz(r-4.5-x86_64)MultiBD_1.0.2.tgz(r-4.5-arm64)
MultiBD_1.0.2.tar.gz(r-4.7-arm64)MultiBD_1.0.2.tar.gz(r-4.7-x86_64)MultiBD_1.0.2.tar.gz(r-4.6-arm64)MultiBD_1.0.2.tar.gz(r-4.6-x86_64)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
MultiBD/json (API)

# Install 'MultiBD' in R:

install.packages('MultiBD', repos = c('https://msuchard.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/msuchard/multibd/issues

Uses libs:

c++– GNU Standard C++ Library v3

Datasets:

Eyam - Eyam plague.

On CRAN:

cpp

6.55 score 6 stars 37 scripts 367 downloads 4 exports 3 dependencies

Last updated from:8f706e9127. Checks:12 OK, 1 FAIL. Indexed: yes.

Target	Result	Time
linux-devel-arm64	OK	166
linux-devel-x86_64	OK	191
source / vignettes	OK	211
linux-release-arm64	OK	217
linux-release-x86_64	OK	191
macos-release-arm64	OK	130
macos-release-x86_64	OK	345
macos-oldrel-arm64	OK	155
macos-oldrel-x86_64	OK	279
windows-devel	OK	197
windows-release	OK	185
windows-oldrel	OK	179
wasm-release	FAIL	141

Exports:bbd_prob dbd_prob SEIR_prob SIR_prob

Dependencies:BH Rcpp RcppParallel

bdsem_tutorial

1 SIR model and proposed branching approximation | 2 R code

Rendered fromSIRtrans.Rnwusingknitr::knitr

Last update: 2016-07-19
Started: 2015-06-04

Simple MCMC under SIR

Rendered fromSIR-MCMC.Rmdusingknitr::rmarkdown

Last update: 2016-07-19
Started: 2016-03-09

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Transition probabilities of a birth/birth-death process	bbd_prob
Transition probabilities of a death/birth-death process	dbd_prob
Eyam plague.	Eyam
Multivariate birth-death processes	MultiBD-package MultiBD
Transition probabilities of an SEIR process	SEIR_prob
Transition probabilities of an SIR process	SIR_prob